Suspended particles from the lower Changjiang were collected monthly from 2003 to 2011, which corresponds to the three construction periods of the Three Gorges Dam. Organic carbon (%OC), organic carbon to total nitrogen molar ratio, stable carbon isotope, and terrestrial biomarkers were examined. Rating curve studies were applied for the temporal trend analysis. The composition of particulate lignin phenols exhibited clear annual and periodic variations but only minor seasonal changes. Lignin phenol ratios (vanillyl/syringyl and cinnamyl/vanillyl) indicated that the terrigenous organic matter (OM) was primarily composed of woody and nonwoody tissue derived from angiosperm plants. The low-lignin phenol yields (Λ8) in combination with higher acid to aldehyde ratios reflected a substantial contribution fromsoil OM to the particle samples or modifications during river transport. The temporal shift of the lignin phenol vegetation index with the sediment load during the flood seasons revealed particulate organic matter (POM) erosion from soils and the impact of hydrodynamic processes. The dam operations affected the seasonal variability of terrigenous OM fluxes, although the covariation of lignin and sediment loads with discharged water implies that unseasonal extreme conditions and climate changemost likely had larger influences, because decreases in the sediment load and lignin flux alter the structure and composition of particulate OM (POM) on interannual time scales, indicating that they may be driven by climate variability. The modification of the composition and structure of POM will have significant impacts on regional carbon cycles and marine ecosystems.