Quicktree-SD


Contact
Stephan.Frickenhaus [ at ] awi.de

Abstract

Phylogenetic methods are becoming part of the standard method-ologies used in the analyses of biological sequence data, but several of the classical tools of phylogenetic inference were not designed with high throughput applications in mind. During our surveys, we haven't found software for the fast inference of neighbor joining trees from sequence alignments which could use biologically realistic substitution models with protein alignments. Thus, we developed quicktree-sd based on an efficient implementation of the neighbor joining algorithm, by implementing an amino acid distance correction based on Scoredist distances.



Item Type
Software
Authors
Divisions
Programs
Publication Status
Published
Eprint ID
20847
Cite as
Frickenhaus, S. and Beszteri, B. (2008): Quicktree-SD , [Software]


Download
[thumbnail of Fulltext]
Preview
PDF (Fulltext)
Fri2008j.pdf

Download (67kB) | Preview
Cite this document as:
[thumbnail of quicktree-sd-1-2-tar.gz]
Other
quicktree-sd-1-2-tar.gz

Download (1MB)

Share
Add to AnyAdd to TwitterAdd to FacebookAdd to LinkedinAdd to PinterestAdd to Email

Research Platforms
N/A

Campaigns
N/A


Actions
Edit Item Edit Item