Evolution of Codon Usage In The Smallest Photosynthetic Eukaryotes And Their Giant Viruses


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Uwe.John [ at ] awi.de

Abstract

Prasinoviruses are among the largest viruses (>200 kbp) and encode several hundreds of protein coding genes, including most genes of the DNA replication machinery and several genes involved in transcription and translation, as well as tRNAs. They can infect and lyse small eukaryotic planktonic marine green algae, thereby affecting global algal population dynamics. Here we investigate the causes of codon usage bias in one prasinovirus, OtV5, and its host Ostreococcus tauri, during a viral infection using microarray expression data. We show that (i) codon usage bias in the host and in the viral genes increases with expression levels and (ii) optimal codons use those tRNAs encoded by the most abundant host tRNA genes, supporting the notion of translational optimization by natural selection. We find evidence that viral tRNA genes complement the host tRNA pool for those viral amino acids whose host tRNAs are in short supply. We further discuss the coevolution of Codon usage bias in hosts and prasinoviruses by comparing optimal codons in 3 evolutionary Diverged host--‐virus specific pairs whose complete genome sequences are known.



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ISI/Scopus peer-reviewed
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Published
Eprint ID
32855
DOI 10.1093/gbe/evt053

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Michely, S. , Toulza, E. , Subirana, L. , John, U. , Cognat, V. , Maréchal-Drouard, L. , Grimsley, N. , Moreau, H. and Piganeau, G. (2013): Evolution of Codon Usage In The Smallest Photosynthetic Eukaryotes And Their Giant Viruses , Genome Biology and Evolution, 5 (5), pp. 848-859 . doi: 10.1093/gbe/evt053


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