hdl:10013/epic.44589
Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing
Kopf, Anna, Kostadinov, Ivaylo, Wichels, Antje
ORCID: https://orcid.org/0000-0002-2060-1845, Quast, Christian and Glöckner, Frank Oliver
ORCID: https://orcid.org/0000-0001-8528-9023
;
![](/images/orcid_16x16.png)
![](/images/orcid_16x16.png)
Contact
Antje.Wichels [ at ] awi.de
Abstract
Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst the winter time prior to the occurrence of the spring diatom bloom. Up to 58% of all sequences could be assigned to predicted genes. Taxonomic analysis based on expressed 16S ribosomal RNA genes identified Alphaproteobacteria and Gammaproteobacteria as the most active community members.
Item Type
Article
Authors
Kopf, Anna, Kostadinov, Ivaylo, Wichels, Antje
ORCID: https://orcid.org/0000-0002-2060-1845, Quast, Christian and Glöckner, Frank Oliver
ORCID: https://orcid.org/0000-0001-8528-9023
;
![](/images/orcid_16x16.png)
![](/images/orcid_16x16.png)
Divisions
Primary Division
Programs
Helmholtz Research Programs > PACES II (2014-2020) > TOPIC 2: Fragile coasts and shelf sea > WP 2.2: Species interactions in changing and exploited coastal seas
Primary Topic
Helmholtz Programs > Helmholtz Research Programs > PACES II (2014-2020) > TOPIC 2: Fragile coasts and shelf sea > WP 2.2: Species interactions in changing and exploited coastal seas
Publication Status
Published
Eprint ID
36618
DOI
10.1016/j.margen.2014.11.001
Cite as
Kopf, A.
,
Kostadinov, I.
,
Wichels, A.
,
Quast, C.
and
Glöckner, F. O.
(2015):
Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing
,
Marine Genomics,
19
,
pp. 45-46
.
doi: 10.1016/j.margen.2014.11.001
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