publisher:10.3390/quat4010006
Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations
Capo, Eric, Giguet-Covex, Charline, Rouillard, Alexandra, Nota, Kevin, Heintzman, Peter D., Vuillemin, Aurèle, Ariztegui, Daniel, Arnaud, Fabien, Belle, Simon, Bertilsson, Stefan, Bigler, Christian, Bindler, Richard, Brown, Antony G., Clarke, Charlotte L., Crump, Sarah E., Debroas, Didier, Englund, Göran, Ficetola, Gentile Francesco, Garner, Rebecca E., Gauthier, Joanna, Gregory-Eaves, Irene, Heinecke, Liv, Herzschuh, Ulrike 
ORCID: https://orcid.org/0000-0003-0999-1261, Ibrahim, Anan, Kisand, Veljo, Kjær, Kurt H., Lammers, Youri, Littlefair, Joanne, Messager, Erwan, Monchamp, Marie-Eve, Olajos, Fredrik, Orsi, William, Pedersen, Mikkel W., Rijal, Dilli P., Rydberg, Johan, Spanbauer, Trisha, Stoof-Leichsenring, Kathleen R. ORCID: https://orcid.org/0000-0002-6609-3217, Taberlet, Pierre, Talas, Liisi, Thomas, Camille, Walsh, David A., Wang, Yucheng, Willerslev, Eske, van Woerkom, Anne, Zimmermann, Heike H., Coolen, Marco J. L., Epp, Laura S., Domaizon, Isabelle, G. Alsos, Inger and Parducci, Laura
;
ORCID: https://orcid.org/0000-0003-0999-1261, Ibrahim, Anan, Kisand, Veljo, Kjær, Kurt H., Lammers, Youri, Littlefair, Joanne, Messager, Erwan, Monchamp, Marie-Eve, Olajos, Fredrik, Orsi, William, Pedersen, Mikkel W., Rijal, Dilli P., Rydberg, Johan, Spanbauer, Trisha, Stoof-Leichsenring, Kathleen R. ORCID: https://orcid.org/0000-0002-6609-3217, Taberlet, Pierre, Talas, Liisi, Thomas, Camille, Walsh, David A., Wang, Yucheng, Willerslev, Eske, van Woerkom, Anne, Zimmermann, Heike H., Coolen, Marco J. L., Epp, Laura S., Domaizon, Isabelle, G. Alsos, Inger and Parducci, Laura
;
Contact
ulrike.herzschuh [ at ] awi.de
Abstract
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises
Item Type
Article
Authors
Capo, Eric, Giguet-Covex, Charline, Rouillard, Alexandra, Nota, Kevin, Heintzman, Peter D., Vuillemin, Aurèle, Ariztegui, Daniel, Arnaud, Fabien, Belle, Simon, Bertilsson, Stefan, Bigler, Christian, Bindler, Richard, Brown, Antony G., Clarke, Charlotte L., Crump, Sarah E., Debroas, Didier, Englund, Göran, Ficetola, Gentile Francesco, Garner, Rebecca E., Gauthier, Joanna, Gregory-Eaves, Irene, Heinecke, Liv, Herzschuh, Ulrike ORCID: https://orcid.org/0000-0003-0999-1261, Ibrahim, Anan, Kisand, Veljo, Kjær, Kurt H., Lammers, Youri, Littlefair, Joanne, Messager, Erwan, Monchamp, Marie-Eve, Olajos, Fredrik, Orsi, William, Pedersen, Mikkel W., Rijal, Dilli P., Rydberg, Johan, Spanbauer, Trisha, Stoof-Leichsenring, Kathleen R. ORCID: https://orcid.org/0000-0002-6609-3217, Taberlet, Pierre, Talas, Liisi, Thomas, Camille, Walsh, David A., Wang, Yucheng, Willerslev, Eske, van Woerkom, Anne, Zimmermann, Heike H., Coolen, Marco J. L., Epp, Laura S., Domaizon, Isabelle, G. Alsos, Inger and Parducci, Laura
;
ORCID: https://orcid.org/0000-0003-0999-1261, Ibrahim, Anan, Kisand, Veljo, Kjær, Kurt H., Lammers, Youri, Littlefair, Joanne, Messager, Erwan, Monchamp, Marie-Eve, Olajos, Fredrik, Orsi, William, Pedersen, Mikkel W., Rijal, Dilli P., Rydberg, Johan, Spanbauer, Trisha, Stoof-Leichsenring, Kathleen R. ORCID: https://orcid.org/0000-0002-6609-3217, Taberlet, Pierre, Talas, Liisi, Thomas, Camille, Walsh, David A., Wang, Yucheng, Willerslev, Eske, van Woerkom, Anne, Zimmermann, Heike H., Coolen, Marco J. L., Epp, Laura S., Domaizon, Isabelle, G. Alsos, Inger and Parducci, Laura
;
Divisions
Primary Division
Programs
Helmholtz Research Programs > CHANGING EARTH (2021-2027) > PT5:Dynamics of the Terrestrial Environment and Freshwater Resources under Global and Climate Change > ST5.3: Natural dynamics of the terrestrial Earth surface system
Primary Topic
Helmholtz Programs > Helmholtz Research Programs > CHANGING EARTH (2021-2027) > PT5:Dynamics of the Terrestrial Environment and Freshwater Resources under Global and Climate Change > ST5.3: Natural dynamics of the terrestrial Earth surface system
Helmholtz Cross Cutting Activity (2021-2027)
Publication Status
Published
Eprint ID
54737
DOI
10.3390/quat4010006
Edit Item
Cite as
Capo, E.
,
Giguet-Covex, C.
,
Rouillard, A.
,
Nota, K.
,
Heintzman, P. D.
,
Vuillemin, A.
,
Ariztegui, D.
,
Arnaud, F.
,
Belle, S.
,
Bertilsson, S.
,
Bigler, C.
,
Bindler, R.
,
Brown, A. G.
,
Clarke, C. L.
,
Crump, S. E.
,
Debroas, D.
,
Englund, G.
,
Ficetola, G. F.
,
Garner, R. E.
,
Gauthier, J.
,
Gregory-Eaves, I.
,
Heinecke, L.
,
Herzschuh, U.
,
Ibrahim, A.
,
Kisand, V.
,
Kjær, K. H.
,
Lammers, Y.
,
Littlefair, J.
,
Messager, E.
,
Monchamp, M. E.
,
Olajos, F.
,
Orsi, W.
,
Pedersen, M. W.
,
Rijal, D. P.
,
Rydberg, J.
,
Spanbauer, T.
,
Stoof-Leichsenring, K. R.
,
Taberlet, P.
,
Talas, L.
,
Thomas, C.
,
Walsh, D. A.
,
Wang, Y.
,
Willerslev, E.
,
van Woerkom, A.
,
Zimmermann, H. H.
,
Coolen, M. J. L.
,
Epp, L. S.
,
Domaizon, I.
,
G. Alsos, I.
and
Parducci, L.
(2021):
Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations
,
Quaternary,
4
(1),
p. 6
.
doi: 10.3390/quat4010006
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info:eu-repo/grantAgreement/EC/H2020/772852
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