The Kamchatka Peninsula in the far east of Russia is a substantial landmass that is poorly documented in terms of most elements of biodiversity. Here we provide the first study of modern assemblages of testate amoebae, a widespread group of protists that are particularly abundant in soils. We present a data set of 78 widely distributed samples, including forest, fen, scrub and bog habitats. Testate amoebae are abundant and diverse across Kamchatka with 119 taxa identified. The assemblage is primarily composed of widespread taxa, but rarer occurrences such as Cyclopyxis puteus hint at important biogeographical differences that will require confirmation with molecular data. Assemblages from mineral soils are significantly different from those of peatlands with the former characterized by small idiosome taxa and the latter by larger taxa, often with secretion tests. Water table depth explained significant variance in the peatland samples, supporting the use of testate amoebae in palaeoecological studies. This study adds to our knowledge of the biodiversity of Kamchatka and the global biogeography of protists, and it paves the way for palaeoecological studies to understand long-term environmental change in this region.