Items where Author is "Eren, A Murat"
Number of items: 27.
Article
Article
Veseli, I. ORCID: https://orcid.org/0000-0003-2390-5286, DeMers, M. A. , Cooper, Z. S. , Schechter, M. S. , Miller, S. , Weber, L. , Smith, C. B. , Rodriguez, L. T. , Schroer, W. F. , McIlvin, M. R. , Lopez, P. Z. , Saito, M. , Dyhrman, S. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Moran, M. A. and Braakman, R.
(2024)
Digital Microbe: a genome-informed data integration framework for team science on emerging model organisms
,
Scientific Data,
11
(1),
p. 967
.
doi:
10.1038/s41597-024-03778-z
, hdl:
10013/epic.9994689a-518e-4aec-adbf-f8956d4fd2fd
Article
Peña-Montenegro, T. D. , Kleindienst, S. , Allen, A. E. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, McCrow, J. P. , Arnold, J. and Joye, S. B.
(2024)
Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant
/
Biddle, J. F. (editor)
,
Applied and Environmental Microbiology,
90
(8),
e01083-e01024
.
doi:
10.1128/aem.01083-24
, hdl:
10013/epic.8718b808-07d7-41fe-9df9-eb8739e88856
Article
Peña-Montenegro, T. D. , Kleindienst, S. , Allen, A. E. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, McCrow, J. P. , Arnold, J. and Joye, S. B.
(2024)
Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant
/
Biddle, J. F. (editor)
,
Applied and Environmental Microbiology,
90
(8),
e01083-e01024
.
doi:
10.1128/aem.01083-24
, hdl:
10013/epic.902cefee-8910-4712-83cf-8d384c67b765
Article
Yang, M. , Zheng, X. , Fan, J. , Cheng, W. , Yan, T. , Lai, Y. , Zhang, N. , Lu, Y. , Qi, J. , Huo, Z. , Xu, Z. , Huang, J. , Jiao, Y. , Liu, B. , Pang, R. , Zhong, X. , Huang, S. , Luo, G. , Lee, G. , Jobin, C. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Chang, E. B. , Wei, H. , Pan, T. and Wang, X.
(2024)
Antibiotic‐Induced Gut Microbiota Dysbiosis Modulates Host Transcriptome and m6A Epitranscriptome via Bile Acid Metabolism
,
Advanced Science,
11
(28),
p. 2307981
.
doi:
10.1002/advs.202307981
, hdl:
10013/epic.722df8f2-fdb0-4bb3-9a48-9be29405cf02
Article
Yang, M. , Zheng, X. , Fan, J. , Cheng, W. , Yan, T. , Lai, Y. , Zhang, N. , Lu, Y. , Qi, J. , Huo, Z. , Xu, Z. , Huang, J. , Jiao, Y. , Liu, B. , Pang, R. , Zhong, X. , Huang, S. , Luo, G. , Lee, G. , Jobin, C. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Chang, E. B. , Wei, H. , Pan, T. and Wang, X.
(2024)
Antibiotic‐Induced Gut Microbiota Dysbiosis Modulates Host Transcriptome and m6A Epitranscriptome via Bile Acid Metabolism
,
Advanced Science,
11
(28),
p. 2307981
.
doi:
10.1002/advs.202307981
, hdl:
10013/epic.4e27fcd8-14d3-443b-8825-9c7e14e85921
Article
Möller, L. , Vainshtein, Y. , Meyer, B. ORCID: https://orcid.org/0000-0001-6804-9896, Neidhardt, J. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Sohn, K. and Rabus, R.
(2024)
Rich microbial and depolymerising diversity in Antarctic krill gut.
/
Kormas, K. A. (editor)
,
Microbiology Spectrum,
e0403523-e0403523
.
doi:
10.1128/spectrum.04035-23
, hdl:
10013/epic.55ab403f-7f44-4f90-9f86-9524cbb23fbb
Article
Fogarty, E. C. , Schechter, M. S. , Lolans, K. , Sheahan, M. L. , Veseli, I. ORCID: https://orcid.org/0000-0003-2390-5286, Moore, R. M. , Kiefl, E. , Moody, T. , Rice, P. A. , Yu, M. K. , Mimee, M. , Chang, E. B. , Ruscheweyh, H. J. , Sunagawa, S. , Mclellan, S. L. , Willis, A. D. , Comstock, L. E. and Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827
(2024)
A cryptic plasmid is among the most numerous genetic elements in the human gut
,
Cell,
187
(5),
1206-1222.e16
.
doi:
10.1016/j.cell.2024.01.039
, hdl:
10013/epic.41f8282b-ce80-44a9-9f9f-b12ef8def8e7
Article
Fiebig, A. , Schnizlein, M. K. , Pena-Rivera, S. , Trigodet, F. , Dubey, A. A. , Hennessy, M. K. , Basu, A. , Pott, S. , Dalal, S. , Rubin, D. , Sogin, M. L. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Chang, E. B. and Crosson, S.
(2024)
Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient
/
Harwood, C. S. (editor)
,
mBio,
15
(1),
e02830-e02823
.
doi:
10.1128/mbio.02830-23
, hdl:
10013/epic.74078163-500b-43e1-bd49-45c56b869034
Article
Trouche, B. , Schrieke, H. , Duron, O. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827 and Reveillaud, J.
(2024)
Wolbachia populations across organs of individual Culex pipiens: highly conserved intra-individual core pangenome with inter-individual polymorphisms
,
ISME Communications,
4
(1),
ycae078-ycae078
.
doi:
10.1093/ismeco/ycae078
, hdl:
10013/epic.ebe251c8-060c-499a-83d1-16db22e682b7
Article
Little, A. S. , Younker, I. T. , Schechter, M. S. , Bernardino, P. N. , Méheust, R. , Stemczynski, J. , Scorza, K. , Mullowney, M. W. , Sharan, D. , Waligurski, E. , Smith, R. , Ramanswamy, R. , Leiter, W. , Moran, D. , McMillin, M. , Odenwald, M. A. , Iavarone, A. T. , Sidebottom, A. M. , Sundararajan, A. , Pamer, E. G. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827 and Light, S. H.
(2024)
Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration
,
Nature Microbiology,
9
(1),
pp. 55-69
.
doi:
10.1038/s41564-023-01560-2
, hdl:
10013/epic.fd7764ea-fe62-4960-89d0-23209161724f
Article
Watson, A. R. , Füssel, J. , Veseli, I. ORCID: https://orcid.org/0000-0003-2390-5286, DeLongchamp, J. Z. , Silva, M. , Trigodet, F. , Lolans, K. , Shaiber, A. , Fogarty, E. , Runde, J. M. , Quince, C. , Yu, M. K. , Söylev, A. , Morrison, H. G. , Lee, S. T. , Kao, D. , Rubin, D. T. , Jabri, B. , Louie, T. and Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827
(2023)
Metabolic independence drives gut microbial colonization and resilience in health and disease
,
Genome Biology,
24
(1),
p. 78
.
doi:
10.1186/s13059-023-02924-x
, hdl:
10013/epic.5368cb4d-25eb-4bfc-ad2c-4244fb594980
Article
Peña-Montenegro, T. D. , Kleindienst, S. , Allen, A. E. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, McCrow, J. P. , Sánchez-Calderón, J. D. , Arnold, J. and Joye, S. B.
(2023)
Species-specific responses of marine bacteria to environmental perturbation
,
ISME Communications,
3
(1),
p. 99
.
doi:
10.1038/s43705-023-00310-z
, hdl:
10013/epic.f0808fea-cc98-4335-be7a-6fc0a2a05725
Article
Ghousein, A. , Tutagata, J. , Schrieke, H. , Etienne, M. , Chaumeau, V. , Boyer, S. , Pages, N. , Roiz, D. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Cambray, G. and Reveillaud, J.
(2023)
pWCP is a widely distributed and highly conserved Wolbachia plasmid in Culex pipiens and Culex quinquefasciatus mosquitoes worldwide
,
ISME Communications,
3
(1),
p. 40
.
doi:
10.1038/s43705-023-00248-2
, hdl:
10013/epic.bc8c1e4e-6723-4b01-b379-2cea7eafe048
Article
Wu-Woods, N. J. , Barlow, J. T. , Trigodet, F. , Shaw, D. G. , Romano, A. E. , Jabri, B. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827 and Ismagilov, R. F.
(2023)
Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples
,
Nature Methods,
20
(11),
pp. 1672-1682
.
doi:
10.1038/s41592-023-02025-4
, hdl:
10013/epic.96fe2410-b2cc-4fd2-b31f-d2b23d4ddd0e
Article
Veseli, I. ORCID: https://orcid.org/0000-0003-2390-5286, Chen, Y. T. , Schechter, M. S. , Vanni, C. , Fogarty, E. C. , Watson, A. R. , Jabri, B. , Blekhman, R. , Willis, A. D. , Yu, M. K. , Fernàndez-Guerra, A. , Füssel, J. and Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827
(2023)
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress
,
eLife,
4
(06-07),
2023.05.10.540289-2023.05.10.540289
.
doi:
10.7554/eLife.89862
, hdl:
10013/epic.5812ff84-0c32-4a74-a9ad-84081f35ed61
Article
Runde, J. , Veseli, I. ORCID: https://orcid.org/0000-0003-2390-5286, Fogarty, E. C. , Watson, A. R. , Clayssen, Q. , Yosef, M. , Shaiber, A. , Verma, R. , Quince, C. , Gerasimidis, K. , Rubin, D. T. and Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827
(2023)
Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn’s Disease
,
Journal of Crohn's and Colitis,
17
(7),
pp. 1103-1113
.
doi:
10.1093/ecco-jcc/jjad031
, hdl:
10013/epic.54ce949d-75b3-4362-abd9-2e03d6612b2e
Article
Kiefl, E. , Esen, O. C. , Miller, S. E. , Kroll, K. L. , Willis, A. D. , Rappé, M. S. , Pan, T. and Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827
(2023)
Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution
,
Science Advances,
9
(8),
eabq4632-eabq4632
.
doi:
10.1126/sciadv.abq4632
, hdl:
10013/epic.167e267e-8d86-4ae4-8d24-f7ceeea90ba0
Article
Chitale, P. , Lemenze, A. D. , Fogarty, E. C. , Shah, A. , Grady, C. , Odom-Mabey, A. R. , Johnson, W. E. , Yang, J. H. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Brosch, R. , Kumar, P. and Alland, D.
(2022)
A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome
,
Nature Communications,
13
(1),
p. 7068
.
doi:
10.1038/s41467-022-34853-x
, hdl:
10013/epic.76519194-808b-46e8-a905-5b60a5707f1f
Article
Roguet, A. , Newton, R. J. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827 and McLellan, S. L.
(2022)
Guts of the Urban Ecosystem: Microbial Ecology of Sewer Infrastructure
/
Allard, S. M. (editor)
,
mSystems,
7
(4),
e00118-e00122
.
doi:
10.1128/msystems.00118-22
, hdl:
10013/epic.6f9848dc-c2f9-4aff-83b6-4f567e570f3b
Article
Delmont, T. O. , Gaia, M. , Hinsinger, D. D. , Frémont, P. , Vanni, C. , Fernandez-Guerra, A. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Kourlaiev, A. , d'Agata, L. , Clayssen, Q. , Villar, E. , Labadie, K. , Cruaud, C. , Poulain, J. , Da Silva, C. , Wessner, M. , Noel, B. , Aury, J. M. , Coordinators, T. O. , Sunagawa, S. , Acinas, S. G. , Bork, P. , Karsenti, E. , Bowler, C. , Sardet, C. , Stemmann, L. , de Vargas, C. , Wincker, P. , Lescot, M. , Babin, M. , Gorsky, G. , Grimsley, N. , Guidi, L. , Hingamp, P. , Jaillon, O. , Kandels, S. , Iudicone, D. , Ogata, H. , Pesant, S. , Sullivan, M. B. , Not, F. , Lee, K. B. , Boss, E. , Cochrane, G. , Follows, M. , Poulton, N. , Raes, J. , Sieracki, M. , Speich, S. , de Vargas, C. , Bowler, C. , Karsenti, E. , Pelletier, E. , Wincker, P. and Jaillon, O.
(2022)
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
,
Cell Genomics,
2
(5),
p. 100123
.
doi:
10.1016/j.xgen.2022.100123
, hdl:
10013/epic.676c1c10-b538-48e1-bdd8-345c4bf32b73
Article
Moran, M. A. , Kujawinski, E. B. , Schroer, W. F. , Amin, S. A. , Bates, N. R. , Bertrand, E. M. , Braakman, R. , Brown, C. T. , Covert, M. W. , Doney, S. C. , Dyhrman, S. T. , Edison, A. S. , Eren, A. M. ORCID: https://orcid.org/0000-0001-9013-4827, Levine, N. M. , Li, L. , Ross, A. C. , Saito, M. A. , Santoro, A. E. , Segrè, D. , Shade, A. , Sullivan, M. B. and Vardi, A.
(2022)
Microbial metabolites in the marine carbon cycle
,
Nature Microbiology,
7
(4),
pp. 508-523
.
doi:
10.1038/s41564-022-01090-3
, hdl:
10013/epic.3addec45-98a0-4f62-b3a4-0ae87fc2a3cf
Article
Vanni, C. , Schechter, M. S. , Acinas, S. G. , Barberán, A. , Buttigieg, P. L. ORCID: https://orcid.org/0000-0002-4366-3088, Casamayor, E. O. , Delmont, T. O. , Duarte, C. M. , Eren, A. M. , Finn, R. D. , Kottmann, R. , Mitchell, A. , Sánchez, P. , Siren, K. , Steinegger, M. , Gloeckner, F. O. and Fernàndez-Guerra, A.
(2022)
Unifying the known and unknown microbial coding sequence space
,
eLife,
11
,
e67667-
.
doi:
10.7554/elife.67667
, hdl:
10013/epic.729fafee-fa2d-4b35-9011-1f33a8a3dc53
Article
Bowers, R. M. , Kyrpides, N. C. , Stepanauskas, R. , Harmon-Smith, M. , Doud, D. , Reddy, T. , Schulz, F. , Jarett, J. , Rivers, A. R. , Eloe-Fadrosh, E. A. , Tringe, S. G. , Ivanova, N. N. , Copeland, A. , Clum, A. , Becraft, E. D. , Malmstrom, R. R. , Birren, B. , Podar, M. , Bork, P. , Weinstock, G. M. , Garrity, G. M. , Dodsworth, J. A. , Yooseph, S. , Sutton, G. , Glöckner, F. O. ORCID: https://orcid.org/0000-0001-8528-9023, Gilbert, J. A. , Nelson, W. C. , Hallam, S. J. , Jungbluth, S. P. , Ettema, T. J. , Tighe, S. , Konstantinidis, K. T. , Liu, W. T. , Baker, B. J. , Rattei, T. , Eisen, J. A. , Hedlund, B. , McMahon, K. D. , Fierer, N. , Knight, R. , Finn, R. , Cochrane, G. , Karsch-Mizrachi, I. , Tyson, G. W. , Rinke, C. , Lapidus, A. , Meyer, F. , Yilmaz, P. , Parks, D. H. , Eren, A. M. , Schriml, L. , Banfield, J. F. , Hugenholtz, P. and Woyke, T.
(2018)
Erratum: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
,
Nature Biotechnology,
36
(2),
p. 196
.
doi:
10.1038/nbt0218-196a
, hdl:
10013/epic.a7d71b17-85ab-40fc-9138-be4cd1f122e2
This list was generated on Fri Dec 6 11:07:52 2024 UTC.