EPIC.awi.de
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Article
Dimitrova, M. , Meyer, R. , Buttigieg, P. L. ![]() Streamlined Conversion of Omics Metadata into Manuscript Facilitates Publishing and Reuse of Omics Data ,
Biodiversity Information Science and Standards,
4
(e59041)
.
doi:https://doi.org/10.3897/biss.4.59041
, hdl:10013/epic.a518fa88-b6d0-4242-b9ec-8d6dae74f318
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Article
Hardisty, A. R. , Michener, W. K. , Agosti, D. , García, E. A. , Bastin, L. , Belbin, L. , Bowser, A. , Buttigieg, P. L. ![]() The Bari Manifesto: An interoperability framework for essential biodiversity variables ,
Ecological informatics,
49
,
pp. 22-31
.
doi:https://doi.org/10.1016/j.ecoinf.2018.11.003
, hdl:10013/epic.d0a43d6f-e8ca-469d-95ec-ab54bb7ecfd4
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Article
Pearlman, J. , Bushnell, M. , Coppola, L. , Karstensen, J. , Buttigieg, P. L. ![]() Evolving and Sustaining Ocean Best Practices and Standards for the Next Decade ,
Frontiers in Marine Science,
6
,
p. 277
.
doi:https://doi.org/10.3389/fmars.2019.00277
, hdl:10013/epic.ec9f76c9-a8ff-429c-96e4-24ef1c61ef0a
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Article
Canonico, G. , Buttigieg, P. L. ![]() Global Observational Needs and Resources for Marine Biodiversity ,
Frontiers in Marine Science,
6
,
p. 367
.
doi:https://doi.org/10.3389/fmars.2019.00367
, hdl:10013/epic.d668e5f7-9fd4-409c-bd88-58af4fcc7cda
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Article
Kahlert, M. , Alfjorden, A. , Apunte-Ramos, K. , Bailet, B. , Pérez Burillo, J. , Carrera Gonzalez, A. G. , Castro, D. , Di Bernardi, C. , Dully, V. , Fekete, J. , Frühe, L. , González, R. , Gratsia, E. , Hanjalić, J. , Kamberović, J. , Kelly, A. M. , Meriggi, C. , Nousiainen, I. , Ørberg, S. , Orr, J. , Quintana, C. , Papatheodoulou, A. , Sargac, J. , Shahbaz, M. , Tapolczai, K. , Tosic, K. , Wallin, I. , Zupančič, M. , Bohman, P. , Buttigieg, P. L. ![]() New molecular methods to assess biodiversity. Potentials and pitfalls of DNA metabarcoding: a workshop report ,
Research Ideas and Outcomes,
5
.
doi:https://doi.org/10.3897/rio.5.e38915
, hdl:10013/epic.cdfe0289-ede1-411b-a84c-a8aed1415284
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Article
Buck, J. J. H. , Bainbridge, S. J. , Burger, E. F. , Kraberg, A. C. ![]() ![]() ![]() ![]() Ocean Data Product Integration Through Innovation-The Next Level of Data Interoperability ,
Frontiers in Marine Science,
6
,
p. 32
.
doi:https://doi.org/10.3389/fmars.2019.00032
, hdl:10013/epic.d799bb9a-82cf-4f29-9cbc-302e88dc3085
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Article
Speich, S. , Lee, T. , Muller-Karger, F. E. , Lorenzoni, L. , Pascual, A. , Jin, D. , Delory, E. , Reverdin, G. , Siddorn, J. , Lewis, M. R. , Marba, N. , Buttigieg, P. L. ![]() Oceanobs19: An Ocean of Opportunity ,
Frontiers in Marine Science,
6
,
p. 570
.
doi:https://doi.org/10.3389/fmars.2019.00570
, hdl:10013/epic.2b845dcc-f500-4663-b127-e6931428e5bf
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Article
Bax, N. J. , Miloslavich, P. , Muller-Karger, F. E. , Allain, V. , Appeltans, W. , Batten, S. D. , Benedetti-Cecchi, L. , Buttigieg, P. L. ![]() A Response to Scientific and Societal Needs for Marine Biological Observations ,
Frontiers in Marine Science,
6
.
doi:https://doi.org/10.3389/fmars.2019.00395
, hdl:10013/epic.dfb09cf7-abd7-46e1-8339-b35958d5027c
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Article
Guevara Campoverde, N. C. , Hassenrück, C. , Buttigieg, P. L. ![]() Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions ,
PeerJ,
6
,
e5984
.
doi:https://doi.org/10.7717/peerj.5984
, hdl:10013/epic.4c5897f3-53ca-4807-9c8f-9e0c489edbe8
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Article
Dooley, D. M. , Griffiths, E. J. , Gosal, G. S. , Buttigieg, P. L. ![]() FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration ,
npj Science of Food,
2
(23),
pp. 1-10
.
doi:https://doi.org/10.1038/s41538-018-0032-6
, hdl:10013/epic.dad5e7e9-b44f-4a3f-b882-8e13e8060b64
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Article
Krukenberg, V. , Riedel, D. , Gruber-Vodicka, H. R. , Buttigieg, P. L. ![]() ![]() Gene expression and ultrastructure of meso- and thermophilic methanotrophic consortia ,
Environmental Microbiology,
20
(5),
pp. 1651-1666
.
doi:https://doi.org/10.1111/1462-2920.14077
, hdl:10013/epic.e6133a92-bada-43f2-a519-1a7661e289a8
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Article
Fernández-Méndez, M. , Turk-Kubo, K. A. , Rapp, J. Z. ![]() ![]() ![]() Diazotroph diversity in the sea ice, melt ponds and surface waters of the Eurasian Basin of the Central Arctic Ocean ,
Frontiers in Microbiology,
7
,
p. 1884
.
doi:https://doi.org/10.3389/fmicb.2016.01884
, hdl:10013/epic.48934
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Article
Pafilis, E. , Buttigieg, P. L. , Ferrell, B. , Pereira, E. , Schnetzer, J. , Arvanitidis, C. and Jensen, L. J.
(2016)
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation ,
Database,
2016
,
baw005
.
doi:https://doi.org/10.1093/database/baw005
, hdl:10013/epic.49977
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Article
Griffiths, E. J. , Dooley, D. M. , Buttigieg, P. L. , Hoehndorf, R. , Brinkman, F. S. and Hsiao, W. W.
(2016)
FoodON: A Global Farm-to-Fork Food Ontology. ,
International Conference of Biomedical Ontology,
1747
.
hdl:10013/epic.81be35d7-89d1-4451-a905-f55967622fe2
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Article
Schnetzer, J. , Fernandez-Guerra, A. , Ristov, A. P. , Glöckner, F. O. ![]() MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day ,
Journal of Microbiology & Biology Education,
17
(1),
pp. 163-171
.
doi:https://doi.org/10.1128/jmbe.v17i1.1001
, hdl:10013/epic.49975
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Article
Koureas, D. , Hardisty, A. , Vos, R. , Agosti, D. , Arvanitidis, C. , Bogatencov, P. , Buttigieg, P. L. , de Jong, Y. , Horvath, F. , Gkoutos, G. , Groom, Q. , Kliment, T. , Kõljalg, U. , Manakos, I. , Marcer, A. , Marhold, K. , Morse, D. , Mergen, P. , Penev, L. , Pettersson, L. , Svenning, J. C. , van de Putte, A. and Smith, V.
(2016)
Unifying European Biodiversity Informatics (BioUnify) ,
Research Ideas and Outcomes,
2
,
e7787
.
doi:https://doi.org/10.3897/rio.2.e7787
, hdl:10013/epic.49976
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Article
Buttigieg, P. L. , Pafilis, E. , Lewis, S. E. , Schildhauer, M. P. , Walls, R. L. and Mungall, C. J.
(2016)
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation ,
Journal of Biomedical Semantics,
7
(1)
.
doi:https://doi.org/10.1186/s13326-016-0097-6
, hdl:10013/epic.48681
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Article
Buttigieg, P. L. and Ramette, A.
(2015)
Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait) ,
Frontiers in Microbiology,
5
.
doi:https://doi.org/10.3389/fmicb.2014.00660
, hdl:10013/epic.49973
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Article
Thessen, A. E. , Bunker, D. E. , Buttigieg, P. L. , Cooper, L. D. , Dahdul, W. M. , Domisch, S. , Franz, N. M. , Jaiswal, P. , Lawrence-Dill, C. J. , Midford, P. E. , Mungall, C. J. , Ramírez, M. J. , Specht, C. D. , Vogt, L. , Vos, R. A. , Walls, R. L. , White, J. W. , Zhang, G. , Deans, A. R. , Huala, E. , Lewis, S. E. and Mabee, P. M.
(2015)
Emerging semantics to link phenotype and environment ,
PeerJ,
3
,
e1470
.
doi:https://doi.org/10.7717/peerj.1470
, hdl:10013/epic.49974
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Article
Ramette, A. and Buttigieg, P. L.
(2014)
The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data ,
Frontiers in Microbiology,
5
.
doi:https://doi.org/10.3389/fmicb.2014.00601
, hdl:10013/epic.49970
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Article
Bajic, V. B. , Walls, R. L. , Deck, J. , Guralnick, R. , Baskauf, S. , Beaman, R. , Blum, S. , Bowers, S. , Buttigieg, P. L. , Davies, N. , Endresen, D. , Gandolfo, M. A. , Hanner, R. , Janning, A. , Krishtalka, L. , Matsunaga, A. , Midford, P. , Morrison, N. , Tuama, É. Ó. , Schildhauer, M. , Smith, B. , Stucky, B. J. , Thomer, A. , Wieczorek, J. , Whitacre, J. and Wooley, J.
(2014)
Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies ,
PLoS ONE,
9
(3),
e89606
.
doi:https://doi.org/10.1371/journal.pone.0089606
, hdl:10013/epic.49968
|
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Article
Buttigieg, P. L. and Ramette, A.
(2014)
A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses ,
FEMS Microbiology Ecology,
90
(3),
pp. 543-550
.
doi:https://doi.org/10.1111/1574-6941.12437
, hdl:10013/epic.49971
|
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Article
Deck, J. , Barker, K. , Beaman, R. , Buttigieg, P. L. , Dröge, G. , Guralnick, R. , Miller, C. , Tuama, É. Ó. , Murrell, Z. , Parr, C. , Robbins, B. , Schigel, D. , Stucky, B. , Walls, R. , Wieczorek, J. , Morrison, N. and Wooley, J.
(2013)
Clarifying Concepts and Terms in Biodiversity Informatics ,
Standards in Genomic Sciences,
8
(2),
pp. 352-359
.
doi:https://doi.org/10.4056/sigs.3907833
, hdl:10013/epic.49965
|
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Article
Buttigieg, P. L. ![]() Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes ,
PLoS One,
8
(3)
.
doi:https://doi.org/10.1371/journal.pone.0050869
, hdl:10013/epic.5248eff3-bf25-4522-9184-dfaf8df99a8d
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Article
Yilmaz, P. , Kottmann, R. , Field, D. , Knight, R. , Cole, J. R. , Amaral-Zettler, L. , Gilbert, J. A. , Karsch-Mizrachi, I. , Johnston, A. , Cochrane, G. , Vaughan, R. , Hunter, C. , Park, J. , Morrison, N. , Rocca-Serra, P. , Sterk, P. , Arumugam, M. , Bailey, M. , Baumgartner, L. , Birren, B. W. , Blaser, M. J. , Bonazzi, V. , Booth, T. , Bork, P. , Bushman, F. D. , Buttigieg, P. L. ![]() Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications ,
Nature Biotechnology,
29
(5),
pp. 415-420
.
doi:https://doi.org/10.1038/nbt.1823
, hdl:10013/epic.850f5b93-a095-4cbb-861f-7e3d054b267e
|
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Conference
-Poster
Blumberg, K. , Ponsero, A. , Bomhoff, M. D. , Wood-Charlson, E. M. , Buttigieg, P. L. ![]() Planet Microbe: An Ontology-Enriched Cyberinfrastructure System for FAIR Marine ‘Omics Data ,
Ocean Sciences Meeting 2020,
16 February 2020 - 21 February 2020
.
hdl:10013/epic.afa3a3ab-411f-4dcd-bfb3-8ae0feaaa8f0
|
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Conference
-Talk
Pearlman, J. , Buttigieg, P. L. ![]() Interoperability Across Ocean Research Infrastructures Through Use Of Ocean Best Practices ,
AGU Fall Meeting 2019,
San Francisco, California, USA,
9 December 2019 - 13 December 2019
.
hdl:10013/epic.6e2040f7-ad35-439d-bc6d-edb0b0a727e9
|
|
Conference
-Talk
Buttigieg, P. L. ![]() Creating a global network to link multi-omics and biogeochemical observations through long-term observatories. ,
Geophysical Research Abstracts,
Vienna, Austria,
7 April 2019 - 12 April 2019
.
hdl:10013/epic.cc5fde5e-794a-4fa0-96a4-771fdd5e2648
|
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Conference
-Conference paper
Meador, T. B. , Buttigieg, P. L. ![]() Biogeochemical alignments: the coupling of ecology and geochemistry in the deep biosphere ,
European Geosciences Union 2019,
Vienna, Austria,
7 April 2019 - 12 April 2019
.
hdl:10013/epic.ad54edf2-aadd-4585-9ffa-91043c4979ee
|
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Conference
-Talk
Vogt, L. , Auer, S. , Bartolomaeus, T. , Buttigieg, P. L. ![]() FAIR.ReD: Semantic knowledge graph infrastructure for the life sciences ,
BiodiversityNEXT,
Leiden, The Netherlands,
22 October 2019 - 25 October 2019
.
doi:https://doi.org/10.3897/biss.3.37206
, hdl:10013/epic.cea2d390-1ac3-4dbd-b5aa-8f5b9c96e5c5
|
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Conference
-Poster
Buttigieg, P. L. ![]() ![]() The Global Omics Observatory Network: Shaping standards for long-term molecular observation ,
BiodiversityNEXT,
Leiden, The Netherlands,
22 October 2019 - 25 October 2019
.
doi:https://doi.org/10.3897/biss.3.36712
, hdl:10013/epic.3ebac1df-a9f7-47e4-a72c-469ec2b055fc
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Conference
-Talk
Blum, S. , Barker, K. , Baskauf, S. J. , Berendsohn, W. G. , Buttigieg, P. L. ![]() Integrating ABCD and DarwinCore: Toward a better foundation for biodiversity information standards ,
BiodiversityNEXT,
Leiden, The Netherlands,
22 October 2019 - 25 October 2019
.
doi:https://doi.org/10.3897/biss.3.37491
, hdl:10013/epic.28e4fada-c0f2-4f31-a606-204d911df4a9
|
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Conference
-Talk
Buttigieg, P. L. ![]() ![]() Mainstreaming Molecular Biodiversity: A call for a unified and interoperable framework ,
BiodiversityNEXT,
Leiden, The Netherlands,
22 October 2019 - 25 October 2019
.
doi:https://doi.org/10.3897/biss.3.37338
, hdl:10013/epic.1466da63-125f-47a7-aa33-ea5c024f58ba
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Conference
-Conference paper
Buttigieg, P. L. ![]() The Ocean Best Practices System-Supporting a Transparent and Accessible Ocean ,
OCEANS 2019 MTS/IEEE SEATTLE,
Seattle, Washington, USA,
27 October 2019 - 31 October 2019
.
doi:https://doi.org/10.23919/OCEANS40490.2019.8962680
, hdl:10013/epic.49ee5d9d-3803-49f8-8fab-b280deca9d50
|
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Conference
-Talk
Subramanian, A. , RR, P. K. , Vikkurthi, M. and Buttigieg, P. L. ![]() Semantic Harmonisation of Numeric Data from Open Government Data ,
CoDS-COMAD '19: 6th ACM IKDD CoDS and 24th COMAD,
Kolkata, India,
January 2019 - January 2019
.
doi:https://doi.org/10.1145/3297001.3297032
, hdl:10013/epic.53119ead-7fe7-4c84-b9b2-36aecdc21b84
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Conference
-Talk
Buttigieg, P. L. ![]() Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity ,
BiodiversityNEXT,
Leiden, The Netherlands,
22 October 2019 - 25 October 2019
.
doi:https://doi.org/10.3897/biss.3.36234
, hdl:10013/epic.8ee7acdc-9618-4eba-979f-76ebab4cf767
|
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Conference
-Talk
Ung, V. and Buttigieg, P. L. ![]() Towards an Ontology of Comparative Biogeography: New insights into the semantics of biodiversity conservation ,
BiodiversityNEXT,
Leiden, The Netherlands,
22 October 2019 - 25 October 2019
.
doi:https://doi.org/10.3897/biss.3.37086
, hdl:10013/epic.a32399be-a133-4235-a93c-c2d42a5f77e5
|
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Conference
-Talk
Walls, R. L. , Amaral-Zettler, L. A. , Buttigieg, P. L. ![]() Genomic Observatories Network: socio-technical perspectives on the path to long-term multi-omic observation ,
American Geophysical Union Fall Meeting,
Washington D.C., USA,
10 December 2018 - 14 December 2018
.
hdl:10013/epic.2df17e32-4b51-4aa4-a58c-6ddc81f66faf
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Conference
-Talk
Buttigieg, P. L. ![]() Managing the Evolution and Sustainability of Best Practices Across Ocean Science ,
2018 Ocean Sciences Meeting,
Portland, Oregon, USA,
11 February 2018 - 16 February 2018
.
hdl:10013/epic.5d96c5c1-a5bc-4954-86bb-3960c418cca5
|
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Conference
-Conference paper
Buttigieg, P. L. ![]() Technologies for a FAIRer use of Ocean Best Practices ,
International Conference on Marine Data and Information Systems,
Barcelona, Spain,
5 November 2018 - 7 November 2018
.
hdl:10013/epic.06c8c017-27c2-4ad6-b333-2ea848778ea5
|
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Conference
-Conference paper
Pearlman, J. S. , Buttigieg, P. L. ![]() Accessing existing and emerging best practices for ocean observation a new approach for end-to-end management of best practices ,
OCEANS,
Anchorage, Alaska, USA,
18 September 2017 - 21 September 2017
.
hdl:10013/epic.c6cebb23-64a8-47c7-92c2-fafac1a1aa38
|
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Conference
-Invited talk
Buttigieg, P. L. ![]() Building semantics in the domain of trait data: an OBO Library approach ,
TDWG Annual Conference,
Ottawa, Ontario, Canada,
1 October 2017 - 6 October 2017
.
doi:https://doi.org/10.3897/tdwgproceedings.1.20293
, hdl:10013/epic.83d13813-2f29-4ee5-9ae9-5fc2c61817ae
|
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Conference
-Talk
Walls, R. and Buttigieg, P. L. ![]() Semantically Defining Populations for 'Omics Research ,
TDWG Annual Conference,
Ottawa, Ontario, Canada,
1 October 2017 - 6 October 2017
.
doi:https://doi.org/10.3897/tdwgproceedings.1.20435
, hdl:10013/epic.1d2fddd8-31ae-4a2d-877c-b1ec6ef10ef9
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Conference
-Talk
Ung, V. and Buttigieg, P. L. ![]() BiGAEOn: an ontology for Biogeographic areas ,
TDWG Annual Conference,
Santa Clara de San Carlos, Costa Rica,
5 December 2016 - 9 December 2016
.
hdl:10013/epic.c8224a95-ca52-492e-95fd-cc1ed28c312d
|
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Conference
-Conference paper
Pereira, E. , Buttigieg, P. L. ![]() ![]() Biogeography of biosynthetic gene clusters in the marine environment ,
41st CIESM Conference,
Kiel, Germany,
12 September 2016 - 16 September 2016
.
hdl:10013/epic.0c8ad848-27c5-4592-b839-1c9a092a1fa6
|
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Conference
-Talk
Buttigieg, P. L. ![]() Environmental Semantics for Sustainable Development in an Interconnected Biosphere ,
ICBO/BioCreative 2016,
Corvalis, Oregon, USA,
1 August 2016 - 4 August 2016
.
hdl:10013/epic.6931841a-09b0-46c4-8a8b-7ba45782a8f0
|
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Conference
-Invited talk
Buttigieg, P. L. ![]() Enhancing the semantic layer for marine microbial observation in the multi'omics era ,
Lawrence Berkeley National Laboratory Seminar Series
.
hdl:10013/epic.628c3cfb-7798-47d8-818d-8f89b7ba158d
|
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Conference
-Invited talk
Buttigieg, P. L. ![]() Standardizing the Description of Environments: Perspectives From the Environmental Ontology Project ,
Workshop for the Development of a Framework for Environmental Health Science Language,
Raleigh, North Carolina, USA,
15 September 2014 - 16 September 2014
.
hdl:10013/epic.17f54d39-6463-4581-b1b8-caa61bcf3fc2
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Conference
-Invited talk
Buttigieg, P. L. ![]() ![]() Effects of hosts, spatial scales, and taxonomic resolution on microbial diversity in a rapidly changing world ,
International Symposium on Microbial Ecology,
Seoul, South Korea,
24 August 2014 - 29 August 2014
.
hdl:10013/epic.4705bda9-aff1-4434-874f-7236f54af8c6
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Conference
-Poster
Buttigieg, P. L. , Brandt, P. , Gerdts, G. ![]() ![]() Comparing bacterial community structure across the North Atlantic: insights from PCR-DGGE ,
MarMic Lab Rotation Series 2008, July 2008, Bremen, Germany
.
hdl:10013/epic.31869
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Miscellaneous
Körtzinger, A. , Buttigieg, P. L. ![]() ![]() ![]() ![]() ![]() OceanSITES Innovation Report ,
[Miscellaneous]
hdl:10013/epic.1eebbc1a-4a90-4b58-b3e7-6bfd693ce1c5
|
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Miscellaneous
Lampitt, R. S. , Karstensen, J. , Buttigieg, P. L. ![]() ![]() AtlantOS Deliverable 3.8: OceanSITES Networking Report ,
[Miscellaneous]
hdl:10013/epic.5507f9ff-3f67-42c9-9b67-cd4717259664
|
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Miscellaneous
Connelly, D. , Afonso, P. , Whoriskey, F. , Morris, A. , Mowlem, M. , Sousa Pinto, I. , Davies, N. , Wölfl, A. C. , Handegard, N. O. , Devey, C. W. , Janssen, F. ![]() ![]() AtlantOS Deliverable 6.2: Roadmap for emerging networks ,
[Miscellaneous]
hdl:10013/epic.2347a415-8c86-4478-8cad-87407afac088
|
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Miscellaneous
Buttigieg, P. L. ![]() A brief encounter with ontology in the context of environmental monitoring ,
[Miscellaneous]
hdl:10013/epic.453b0963-6384-4d6c-9edd-ecee2b6879e9
|
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Miscellaneous
Buttigieg, P. L. ![]() Clarifying terms in the SDGs: representing the meaning behind the terminology ,
[Miscellaneous]
hdl:10013/epic.155ebbec-cae2-4e84-8630-28a7feca5b0e
|
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Miscellaneous
Buttigieg, P. L. ![]() Design and development of integrated indicators for the Sustainable Development Goals Report ,
[Miscellaneous]
hdl:10013/epic.7f2be57b-d160-4bea-9dd0-e26eb6e3642d
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