Items where Author is "Buttigieg, Pier Luigi"

Article

Vanni, C. , Schechter, M. S. , Acinas, S. G. , Barberán, A. , Buttigieg, P. L.

, Casamayor, E. O. , Delmont, T. O. , Duarte, C. M. , Eren, A. M. , Finn, R. D. , Kottmann, R. , Mitchell, A. , Sánchez, P. , Siren, K. , Steinegger, M. , Gloeckner, F. O. and Fernàndez-Guerra, A. (2022)
Unifying the known and unknown microbial coding sequence space ,

eLife, 11 , e67667- .

doi:10.7554/elife.67667 , hdl:10013/epic.729fafee-fa2d-4b35-9011-1f33a8a3dc53

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Article

Hörstmann, C.

, Buttigieg, P. L.

, John, U.

, Raes, E. J. , Wolf-Gladrow, D.

, Bracher, A.

and Waite, A.

(2021)
Microbial diversity through an oceanographic lens: refining the concept of ocean provinces through trophic-level analysis and productivity-specific length scales ,

Environmental Microbiology .

doi:10.1111/1462-2920.15832 , hdl:10013/epic.e3a40315-6891-4451-a121-f0337d27141f

Article

Meyer, R. , Buttigieg, P. L.

, Wieczorek, J. , Jeppesen, T. , Duncan, W. , Gan, Y. M. , Sweetlove, M. and Suominen, S. (2021)
Aligning Standards Communities: Sustainable Darwin Core MIxS Interoperability ,

Biodiversity Information Science and Standards, 5 (e73775) .

doi:10.3897/biss.5.73775 , hdl:10013/epic.e370527d-dd9e-42c0-9f45-b504a00c5bcc

Article

Fadeev, E.

, Magda, C. M. , Rapp, J. Z.

, Bienhold, C.

, Salter, I.

, Verena, S. C. , Molari, M. , Halina, T. , Buttigieg, P. L.

and Boetius, A.

(2021)
Comparison of two common 16S rRNA primers (V3-V4 and V4-V5) for studies of Arctic microbial communities ,

Frontiers in Microbiology .

doi:10.3389/fmicb.2021.637526 , hdl:10013/epic.291273cd-6f71-4b0c-bbc4-853a03fef077

Article

Pearlman, J. , Buttigieg, P. L.

, Bushnell, M. , Delgado, C. , Hermes, J. , Heslop, E. , Hörstmann, C.

, Isensee, K. , Karstensen, J. , Lambert, A. , Lara-Lopez, A. , Muller-Karger, F. , Munoz Mas, C. , Pearlman, F. , Pissierssens, P. , Przeslawski, R. , Simpson, P. , van Stavel, J. and Venkatesan, R. (2021)
Evolving and Sustaining Ocean Best Practices to Enable Interoperability in the UN Decade of Ocean Science for Sustainable Development ,

Frontiers in Marine Science, 8 .

doi:10.3389/fmars.2021.619685 , hdl:10013/epic.500f175f-9136-4c54-9e76-8e1e0be9a048

Article

Hörstmann, C.

, Raes, E. J. , Buttigieg, P. L.

, Lo Monaco, C. , John, U.

and Waite, A. M. (2021)
Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the southern Indian Ocean and the Southern Ocean ,

Biogeosciences, 18 (12), pp. 3733-3749 .

doi:10.5194/bg-18-3733-2021 , hdl:10013/epic.468ea141-7724-4a57-9790-dea5e50982a7

Article

Pereira-Flores, E. , Medema, M. , Buttigieg, P. L.

, Meinicke, P. , Glöckner, F. O.

and Fernández-Guerra, A. (2021)
Mining metagenomes for natural product biosynthetic gene clusters: unlocking new potential with ultrafast techniques ,

bioRxiv .

doi:10.1101/2021.01.20.427441 , hdl:10013/epic.0b974a57-4a5c-4234-9ef0-9e868804182f

Article

Jackson, R. , Matentzoglu, N. , Overton, J. , Vita, R. , Balhoff, J. , Buttigieg, P. L.

, Carbon, S. , Courtot, M. , Diehl, A. , Dooley, D. M. , Duncan, W. , Harris, N. , Haendel, M. , Lewis, S. E. , Natale, D. , Osumi-Sutherland, D. , Ruttenberg, A. , Schriml, L. M. , Smith, B. , Stoeckert, C. , Vasilevsky, N. , Walls, R. , Zheng, J. , Mungall, C. J. and Peters, B. (2021)
OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies ,

bioRxiv .

doi:10.1101/2021.06.01.446587 , hdl:10013/epic.a6389712-43dd-4867-8f65-63279bc5fcbb

Article

Hörstmann, C.

, Buttigieg, P. L.

, Simpson, P. , Pearlman, J. and Waite, A. M.

(2021)
Perspectives on Documenting Methods to Create Ocean Best Practices ,

Frontiers in Marine Science, 7 .

doi:10.3389/fmars.2020.556234 , hdl:10013/epic.ad411461-9788-4aa0-b4f6-9cc76e274fb2

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Article

Samuel, R. , Meyer, R. , Buttigieg, P. L.

, Davies, N. , Jeffery, N. , Meyer, C. , Pavloudi, C. , Johnson Pitz, K. , Sweetlove, M. , Theroux, S. , van de Kamp, J. and Watts, A. (2021)
Toward a Global Public Repository of Community Protocols to Encourage Best Practices in Biomolecular Ocean Observing and Research ,

Frontiers in Marine Science, 8 (758694) .

doi:10.3389/fmars.2021.758694 , hdl:10013/epic.12728645-1ef6-484c-9751-8c82f4d17bb2

Article

Vanni, C. , Schechter, M. , Acinas, S. , Barberán, A. , Buttigieg, P. L.

, Casamayor, E. , Delmont, T. , Duarte, C. , Murat Eren, A. , Finn, R. , Kottmann, R. , Mitchell, A. , Sanchez, P. , Siren, K. , Steinegger, M. , Glöckner, F. O.

and Fernandez-Guerra, A. (2021)
Unifying the known and unknown microbial coding sequence space ,

bioRxiv .

doi:10.1101/2020.06.30.180448 , hdl:10013/epic.3bada6c3-3c51-4b45-85ab-afc79f5a92cc

Article

Dimitrova, M. , Meyer, R. , Buttigieg, P. L.

, Georgiev, T. , Zhelezov, G. , Demirov, S. , Smith, V. and Penev, L. (2021)
A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers ,

GigaScience, 10 (5) .

doi:10.1093/gigascience/giab034 , hdl:10013/epic.7801974c-c732-4ab3-8f15-f2bb50311203

Article

Krause, G.

, Wolf, C. , Happe, A. K. , Hauck, J. , Buttigieg, P. L.

, Fuchs, N. , Scheve, J. , König, C. , Wittmer, H. and Raab, K. (2020)
Lessons Learnt From Linking Global Recommendations With Localized Marine Restoration Schemes and Policy Options by Using Mixed Methods ,

Frontiers in Marine Science, 7 .

doi:10.3389/fmars.2020.00532

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Article

Bolhuis, H. , Buttigieg, P. L.

, Goodwin, K. D. , Groben, R. , Iudicone, D. , Lacoursière-Roussel, A. , Pesant, S. , Robinson, S. , Björnsson, S. , Erlendsson, L. and Rae, M. (2020)
AORA - Atlantic Ocean Research Alliance - Marine Microbiome Roadmap ,

Zenodo .

doi:10.5281/zenodo.3632526 , hdl:10013/epic.8d32d9cf-eae6-44fa-9da8-c2035dca62d7

Article

Krause, G. , Wolf, C. , Happe, A. , Hauck, J.

, Buttigieg, P. L.

, Fuchs, N. , Scheve, J. , König, C. , Wittmer, H. and Raab, K. (2020)
Lessons Learnt From Linking Global Recommendations With Localized Marine Restoration Schemes and Policy Options by Using Mixed Methods ,

Frontiers in Marine Science, 7 , p. 532 .

doi:10.3389/fmars.2020.00532 , hdl:10013/epic.851e0993-7213-4d5d-bba9-2cad14bf04b2

Article

Krause, G.

, Wolf, C. , Happe, A. K. , Hauck, J. , Buttigieg, P. L. , Fuchs, N.

, Scheve, J. , König, C.

, Wittmer, H. and Raab, K. (2020)
Lessons Learnt From Linking Global Recommendations With Localized Marine Restoration Schemes and Policy Options by Using Mixed Methods ,

Frontiers in Marine Science, 7 .

doi:10.3389/fmars.2020.00532

[thumbnail of Krause_et_al_2020_lessons_learnt_from_linking_global_recommendations.pdf]

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Article

Dimitrova, M. , Meyer, R. , Buttigieg, P. L.

, Georgiev, T. , Zhelezov, G. , Demirov, S. , Smith, V. and Penev, L. (2020)
Streamlined Conversion of Omics Metadata into Manuscript Facilitates Publishing and Reuse of Omics Data ,

Biodiversity Information Science and Standards, 4 (e59041) .

doi:10.3897/biss.4.59041 , hdl:10013/epic.a518fa88-b6d0-4242-b9ec-8d6dae74f318

Article

Hörstmann, C.

, Buttigieg, P. L.

, Simpson, P. , Pearlman, J. and Waite, A. M. (2020)
Towards a Best Practice for Developing Best Practices in Ocean Observation (BP4BP): Supporting Methodological Evolution through Actionable Documentation ,

Intergovernmental Oceanographic Commission Manuals and Guides, (84) .

doi:10.25607/OBP-781 , hdl:10013/epic.0723284b-3ab9-4123-8b5f-97a0f4f7d696

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Article

Thessen, A. E. , Walls, R. L. , Vogt, L. , Singer, J. , Warren, R. and Buttigieg, P. L.

(2020)
Transforming the study of organisms: Phenomic data models and knowledge bases ,

PLoS Computational Biology, 16 (11), e1008376 .

doi:10.1371/journal.pcbi.1008376 , hdl:10013/epic.be950721-721f-4392-ba32-2f1f40bdbe1a

Article

Arnaud, E. , Laporte, M. , Kim, S. , Aubert, C. , Leonelli, S. , Miro, B. , Cooper, L. , Jaiswal, P. , Kruseman, G. , Shrestha, R. , Buttigieg, P. L.

, Mungall, C. J. , Pietragalla, J. , Agbona, A. , Muliro, J. , Detras, J. , Hualla, V. , Rathore, A. , Das, R. , Dieng, I. , Bauchet, G. , Menda, N. , Pommier, C. , Shaw, F. , Lyon, D. , Mwanzia, L. , Juarez, H. , Bonaiuti, E. , Chiputwa, B. , Obileye, O. , Auzoux, S. , Yeumo, E. , Mueller, L. , Silverstein, K. , Lafargue, A. , Antezana, E. , Devare, M. and King, B. (2020)
The ontologies community of practice: a CGIAR initiative for big data in agrifood systems ,

Patterns, 1 (7), pp. 1-12 .

doi:10.1016/j.patter.2020.100105 , hdl:10013/epic.5f3f9764-e33d-4f90-bd82-34652d395965

Article

Hardisty, A. R. , Michener, W. K. , Agosti, D. , García, E. A. , Bastin, L. , Belbin, L. , Bowser, A. , Buttigieg, P. L.

, Canhos, D. A. , Egloff, W. , De Giovanni, R. , Figueira, R. , Groom, Q. , Guralnick, R. , Hobern, D. , Hugo, W. , Koureas, D. , Ji, L. , Los, W. , Manuel, J. , Manset, D. , Poelen, J. , Saarenmaa, H. , Schigel, D. , Uhlir, P. F. and Kissling, W. D. (2019)
The Bari Manifesto: An interoperability framework for essential biodiversity variables ,

Ecological informatics, 49 , pp. 22-31 .

doi:10.1016/j.ecoinf.2018.11.003 , hdl:10013/epic.d0a43d6f-e8ca-469d-95ec-ab54bb7ecfd4

Article

Pearlman, J. , Bushnell, M. , Coppola, L. , Karstensen, J. , Buttigieg, P. L.

, Pearlman, F. , Simpson, P. , Barbier, M. , Muller-Karger, F. E. , Munoz-Mas, C. , Pissierssens, P. , Chandler, C. , Hermes, J. , Heslop, E. , Jenkyns, R. , Achterberg, E. P. , Bensi, M. , Bittig, H. C. , Blandin, J. , Bosch, J. , Bourles, B. , Bozzano, R. , Buck, J. J. H. , Burger, E. F. , Cano, D. , Cardin, V. , Llorens, M. C. , Cianca, A. , Chen, H. , Cusack, C. , Delory, E. , Garello, R. , Giovanetti, G. , Harscoat, V. , Hartman, S. , Heitsenrether, R. , Jirka, S. , Lara-Lopez, A. , Lantéri, N. , Leadbetter, A. , Manzella, G. , Maso, J. , McCurdy, A. , Moussat, E. , Ntoumas, M. , Pensieri, S. , Petihakis, G. , Pinardi, N. , Pouliquen, S. , Przeslawski, R. , Roden, N. P. , Silke, J. , Tamburri, M. N. , Tang, H. , Tanhua, T. , Telszewski, M. , Testor, P. , Thomas, J. , Waldmann, C. and Whoriskey, F. (2019)
Evolving and Sustaining Ocean Best Practices and Standards for the Next Decade ,

Frontiers in Marine Science, 6 , p. 277 .

doi:10.3389/fmars.2019.00277 , hdl:10013/epic.ec9f76c9-a8ff-429c-96e4-24ef1c61ef0a

Article

Canonico, G. , Buttigieg, P. L.

, Montes, E. , Muller-Karger, F. E. , Stepien, C. , Wright, D. , Benson, A. , Helmuth, B. , Costello, M. , Sousa-Pinto, I. , Saeedi, H. , Newton, J. , Appeltans, W. , Bednaršek, N. , Bodrossy, L. , Best, B. D. , Brandt, A. , Goodwin, K. D. , Iken, K. , Marques, A. C. , Miloslavich, P. , Ostrowski, M. , Turner, W. , Achterberg, E. P. , Barry, T. , Defeo, O. , Bigatti, G. , Henry, L. A. , Ramiro-Sánchez, B. , Durán, P. , Morato, T. , Roberts, J. M. , García-Alegre, A. , Cuadrado, M. S. and Murton, B. (2019)
Global Observational Needs and Resources for Marine Biodiversity ,

Frontiers in Marine Science, 6 , p. 367 .

doi:10.3389/fmars.2019.00367 , hdl:10013/epic.d668e5f7-9fd4-409c-bd88-58af4fcc7cda

Article

Kahlert, M. , Alfjorden, A. , Apunte-Ramos, K. , Bailet, B. , Pérez Burillo, J. , Carrera Gonzalez, A. G. , Castro, D. , Di Bernardi, C. , Dully, V. , Fekete, J. , Frühe, L. , González, R. , Gratsia, E. , Hanjalić, J. , Kamberović, J. , Kelly, A. M. , Meriggi, C. , Nousiainen, I. , Ørberg, S. , Orr, J. , Quintana, C. , Papatheodoulou, A. , Sargac, J. , Shahbaz, M. , Tapolczai, K. , Tosic, K. , Wallin, I. , Zupančič, M. , Bohman, P. , Buttigieg, P. L.

, Häubner, N. , Leese, F. , Macher, J. , Peura, S. , Roslin, T. , Strand, M. , Terenius, O. , Vasselon, V. and Weigand, A. M. (2019)
New molecular methods to assess biodiversity. Potentials and pitfalls of DNA metabarcoding: a workshop report ,

Research Ideas and Outcomes, 5 .

doi:10.3897/rio.5.e38915 , hdl:10013/epic.cdfe0289-ede1-411b-a84c-a8aed1415284

Article

Buck, J. J. H. , Bainbridge, S. J. , Burger, E. F. , Kraberg, A. C.

, Casari, M. , Casey, K. S. , Darroch, L. , Rio, J. D. , Metfies, K.

, Delory, E. , Fischer, P.

, Gardner, T. , Heffernan, R. , Jirka, S. , Kokkinaki, A. , Loebl, M. , Buttigieg, P. L. , Pearlman, J. S. and Schewe, I.

(2019)
Ocean Data Product Integration Through Innovation-The Next Level of Data Interoperability ,

Frontiers in Marine Science, 6 , p. 32 .

doi:10.3389/fmars.2019.00032 , hdl:10013/epic.d799bb9a-82cf-4f29-9cbc-302e88dc3085

Article

Speich, S. , Lee, T. , Muller-Karger, F. E. , Lorenzoni, L. , Pascual, A. , Jin, D. , Delory, E. , Reverdin, G. , Siddorn, J. , Lewis, M. R. , Marba, N. , Buttigieg, P. L.

, Chiba, S. , Manely, J. , Kabo-Bah, A. T. , Desai, K. and Ackerman, A. (2019)
Oceanobs19: An Ocean of Opportunity ,

Frontiers in Marine Science, 6 , p. 570 .

doi:10.3389/fmars.2019.00570 , hdl:10013/epic.2b845dcc-f500-4663-b127-e6931428e5bf

Article

Bax, N. J. , Miloslavich, P. , Muller-Karger, F. E. , Allain, V. , Appeltans, W. , Batten, S. D. , Benedetti-Cecchi, L. , Buttigieg, P. L.

, Chiba, S. , Costa, D. P. , Duffy, J. E. , Dunn, D. C. , Johnson, C. R. , Kudela, R. M. , Obura, D. , Rebelo, L. M. , Shin, Y. J. , Simmons, S. E. and Tyack, P. L. (2019)
A Response to Scientific and Societal Needs for Marine Biological Observations ,

Frontiers in Marine Science, 6 .

doi:10.3389/fmars.2019.00395 , hdl:10013/epic.dfb09cf7-abd7-46e1-8339-b35958d5027c

Article

Guevara Campoverde, N. C. , Hassenrück, C. , Buttigieg, P. L.

and Gärdes, A. (2018)
Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions ,

PeerJ, 6 , e5984 .

doi:10.7717/peerj.5984 , hdl:10013/epic.4c5897f3-53ca-4807-9c8f-9e0c489edbe8

Article

Dooley, D. M. , Griffiths, E. J. , Gosal, G. S. , Buttigieg, P. L.

, Hoehndorf, R. , Lange, M. C. , Schriml, L. M. , Brinkman, F. S. and Hsiao, W. W. (2018)
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration ,

npj Science of Food, 2 (23), pp. 1-10 .

doi:10.1038/s41538-018-0032-6 , hdl:10013/epic.dad5e7e9-b44f-4a3f-b882-8e13e8060b64

Article

Krukenberg, V. , Riedel, D. , Gruber-Vodicka, H. R. , Buttigieg, P. L.

, Tegetmeyer, H. E. , Boetius, A.

and Wegener, G. (2018)
Gene expression and ultrastructure of meso- and thermophilic methanotrophic consortia ,

Environmental Microbiology, 20 (5), pp. 1651-1666 .

doi:10.1111/1462-2920.14077 , hdl:10013/epic.e6133a92-bada-43f2-a519-1a7661e289a8

Article

Fernández-Méndez, M. , Turk-Kubo, K. A. , Rapp, J. Z.

, Buttigieg, P. L. , Krumpen, T.

, Zehr, J. P. and Boetius, A.

(2016)
Diazotroph diversity in the sea ice, melt ponds and surface waters of the Eurasian Basin of the Central Arctic Ocean ,

Frontiers in Microbiology, 7 , p. 1884 .

doi:10.3389/fmicb.2016.01884 , hdl:10013/epic.48934

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Article

Pafilis, E. , Buttigieg, P. L. , Ferrell, B. , Pereira, E. , Schnetzer, J. , Arvanitidis, C. and Jensen, L. J. (2016)
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation ,

Database, 2016 , baw005 .

doi:10.1093/database/baw005 , hdl:10013/epic.49977

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Griffiths, E. J. , Dooley, D. M. , Buttigieg, P. L. , Hoehndorf, R. , Brinkman, F. S. and Hsiao, W. W. (2016)
FoodON: A Global Farm-to-Fork Food Ontology. ,

International Conference of Biomedical Ontology, 1747 .

hdl:10013/epic.81be35d7-89d1-4451-a905-f55967622fe2

Article

Schnetzer, J. , Fernandez-Guerra, A. , Ristov, A. P. , Glöckner, F. O.

, Kopf, A. , Bietz, M. J. , Kottmann, R. and Buttigieg, P. L. (2016)
MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day ,

Journal of Microbiology & Biology Education, 17 (1), pp. 163-171 .

doi:10.1128/jmbe.v17i1.1001 , hdl:10013/epic.49975

Article

Koureas, D. , Hardisty, A. , Vos, R. , Agosti, D. , Arvanitidis, C. , Bogatencov, P. , Buttigieg, P. L. , de Jong, Y. , Horvath, F. , Gkoutos, G. , Groom, Q. , Kliment, T. , Kõljalg, U. , Manakos, I. , Marcer, A. , Marhold, K. , Morse, D. , Mergen, P. , Penev, L. , Pettersson, L. , Svenning, J. C. , van de Putte, A. and Smith, V. (2016)
Unifying European Biodiversity Informatics (BioUnify) ,

Research Ideas and Outcomes, 2 , e7787 .

doi:10.3897/rio.2.e7787 , hdl:10013/epic.49976

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Buttigieg, P. L. , Pafilis, E. , Lewis, S. E. , Schildhauer, M. P. , Walls, R. L. and Mungall, C. J. (2016)
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation ,

Journal of Biomedical Semantics, 7 (1) .

doi:10.1186/s13326-016-0097-6 , hdl:10013/epic.48681

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Buttigieg, P. L. and Ramette, A. (2015)
Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait) ,

Frontiers in Microbiology, 5 .

doi:10.3389/fmicb.2014.00660 , hdl:10013/epic.49973

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Thessen, A. E. , Bunker, D. E. , Buttigieg, P. L. , Cooper, L. D. , Dahdul, W. M. , Domisch, S. , Franz, N. M. , Jaiswal, P. , Lawrence-Dill, C. J. , Midford, P. E. , Mungall, C. J. , Ramírez, M. J. , Specht, C. D. , Vogt, L. , Vos, R. A. , Walls, R. L. , White, J. W. , Zhang, G. , Deans, A. R. , Huala, E. , Lewis, S. E. and Mabee, P. M. (2015)
Emerging semantics to link phenotype and environment ,

PeerJ, 3 , e1470 .

doi:10.7717/peerj.1470 , hdl:10013/epic.49974

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Ramette, A. and Buttigieg, P. L. (2014)
The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data ,

Frontiers in Microbiology, 5 .

doi:10.3389/fmicb.2014.00601 , hdl:10013/epic.49970

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Article

Bajic, V. B. , Walls, R. L. , Deck, J. , Guralnick, R. , Baskauf, S. , Beaman, R. , Blum, S. , Bowers, S. , Buttigieg, P. L. , Davies, N. , Endresen, D. , Gandolfo, M. A. , Hanner, R. , Janning, A. , Krishtalka, L. , Matsunaga, A. , Midford, P. , Morrison, N. , Tuama, É. Ó. , Schildhauer, M. , Smith, B. , Stucky, B. J. , Thomer, A. , Wieczorek, J. , Whitacre, J. and Wooley, J. (2014)
Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies ,

PLoS ONE, 9 (3), e89606 .

doi:10.1371/journal.pone.0089606 , hdl:10013/epic.49968

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Buttigieg, P. L. and Ramette, A. (2014)
A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses ,

FEMS Microbiology Ecology, 90 (3), pp. 543-550 .

doi:10.1111/1574-6941.12437 , hdl:10013/epic.49971

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Deck, J. , Barker, K. , Beaman, R. , Buttigieg, P. L. , Dröge, G. , Guralnick, R. , Miller, C. , Tuama, É. Ó. , Murrell, Z. , Parr, C. , Robbins, B. , Schigel, D. , Stucky, B. , Walls, R. , Wieczorek, J. , Morrison, N. and Wooley, J. (2013)
Clarifying Concepts and Terms in Biodiversity Informatics ,

Standards in Genomic Sciences, 8 (2), pp. 352-359 .

doi:10.4056/sigs.3907833 , hdl:10013/epic.49965

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Buttigieg, P. L.

, Hankeln, W. , Kostadinov, I. , Kottmann, R. , Yilmaz, P. , Duhaime, M. B. and Glöckner, F. O. (2013)
Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes ,

PLoS One, 8 (3) .

doi:10.1371/journal.pone.0050869 , hdl:10013/epic.5248eff3-bf25-4522-9184-dfaf8df99a8d

Article

Yilmaz, P. , Kottmann, R. , Field, D. , Knight, R. , Cole, J. R. , Amaral-Zettler, L. , Gilbert, J. A. , Karsch-Mizrachi, I. , Johnston, A. , Cochrane, G. , Vaughan, R. , Hunter, C. , Park, J. , Morrison, N. , Rocca-Serra, P. , Sterk, P. , Arumugam, M. , Bailey, M. , Baumgartner, L. , Birren, B. W. , Blaser, M. J. , Bonazzi, V. , Booth, T. , Bork, P. , Bushman, F. D. , Buttigieg, P. L.

, Chain, P. S. G. , Charlson, E. , Costello, E. K. , Huot-Creasy, H. , Dawyndt, P. , DeSantis, T. , Fierer, N. , Fuhrman, J. A. , Gallery, R. E. , Gevers, D. , Gibbs, R. A. , Gil, I. S. , Gonzalez, A. , Gordon, J. I. , Guralnick, R. , Hankeln, W. , Highlander, S. , Hugenholtz, P. , Jansson, J. , Kau, A. L. , Kelley, S. T. , Kennedy, J. , Knights, D. , Koren, O. , Kuczynski, J. , Kyrpides, N. , Larsen, R. , Lauber, C. L. , Legg, T. , Ley, R. E. , Lozupone, C. A. , Ludwig, W. , Lyons, D. , Maguire, E. , Methé, B. A. , Meyer, F. , Muegge, B. , Nakielny, S. , Nelson, K. E. , Nemergut, D. , Neufeld, J. D. , Newbold, L. K. , Oliver, A. E. , Pace, N. R. , Palanisamy, G. , Peplies, J. , Petrosino, J. , Proctor, L. , Pruesse, E. , Quast, C. , Raes, J. , Ratnasingham, S. , Ravel, J. , Relman, D. A. , Assunta-Sansone, S. , Schloss, P. D. , Schriml, L. , Sinha, R. , Smith, M. I. , Sodergren, E. , Spor, A. , Stombaugh, J. , Tiedje, J. M. , Ward, D. V. , Weinstock, G. M. , Wendel, D. , White, O. , Whiteley, A. , Wilke, A. , Wortman, J. R. , Yatsunenko, T. and Glöckner, F. O. (2011)
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications ,

Nature Biotechnology, 29 (5), pp. 415-420 .

doi:10.1038/nbt.1823 , hdl:10013/epic.850f5b93-a095-4cbb-861f-7e3d054b267e

Conference -Talk

Hörstmann, C.

, Buttigieg, P. L.

, John, U.

, Raes, E. J. , Wolf-Gladrow, D.

and Waite, A. M. (2021)
HIGH-RESOLUTION OCEANOGRAPHIC AND MICROBIAL DIVERSITY ANALYSES WITHIN TROPHIC GROUPS REVEAL NEW PROVINCIALISM ACROSS THE ATLANTIC OCEAN ,

ASLO 2021 Aquatic Sciences Meeting, online, 22 June 2021 - 27 June 2021 .

hdl:10013/epic.3a0517a8-4fe5-4f1e-a692-9b8f0382a341

Conference -Talk

Buttigieg, P. L.

, Hörstmann, C.

, Simpson, P. and Pearlman, J. S. (2021)
Evolving the UNESCO/IOC Ocean Best Practices System: preparing methods for the oceans’ digital ecosystem ,

International Conference on Marine Data and Information Systems, 2021 - unspecified .

hdl:10013/epic.972c7b64-c2d9-4e2f-a583-9be8c62ab341

Conference -Poster

Blumberg, K. , Ponsero, A. , Bomhoff, M. D. , Wood-Charlson, E. M. , Buttigieg, P. L.

and Hurwitz, B. L. (2020)
Planet Microbe: An Ontology-Enriched Cyberinfrastructure System for FAIR Marine ‘Omics Data ,

Ocean Sciences Meeting 2020, 16 February 2020 - 21 February 2020 .

hdl:10013/epic.afa3a3ab-411f-4dcd-bfb3-8ae0feaaa8f0

Conference -Talk

Buttigieg, P. L.

, Appeltans, W. , Arias, F. , Bajona, L. , Belov, S. , Boyer, T. , Bristol, S. , Calewaert, J. B. , Carter, S. , Canonico, G. , Clausen, A. , De Bruin, T. , Edmunds, R. , Gallage, C. , Geddes, K. , Genio, L. , Giorgetti, A. , Holdsworth, N. , Isensee, K. , Klein, E. , Paterson, A. , Moustahfid, H. , O'Brien, K. , Peng, G. , Pissierssens, P. , Pfeil, B. , Scory, S. , Provoost, P. , Scott, L. , Tirpak, E. , Weatherdon, L. and Garcia, H. (2020)
Towards a Strategy on Ocean Data and Information Stewardship for the UN Decade of Ocean Science for Sustainable Development ,

AGU Fall Meeting, 1 December 2020 - 17 December 2020 .

hdl:10013/epic.949eccda-e860-4f62-bf43-f4b10d62687d

Conference -Talk

Magagna, B. , Moncoiffe, G. , Devaraju, A. , Buttigieg, P. L.

, Stoica, M. and Schindler, S. (2020)
Towards an interoperability framework for observable property terminologies ,

EGU General Assembly, 4 May 2020 - 8 May 2020 .

hdl:10013/epic.58c1bcfe-be03-4494-ac1f-9720c159b4cb

Conference -Talk

Pearlman, J. , Buttigieg, P. L.

, Muller-Karger, F. , Heslop, E. , Bushnell, M. , Simpson, P. , Pissierssens, P. , Karstensen, J. , Hermes, J. C. , Munoz, C. , Przeslawski, R. , Roden, N. and Pearlman, F. (2019)
Interoperability Across Ocean Research Infrastructures Through Use Of Ocean Best Practices ,

AGU Fall Meeting 2019, San Francisco, California, USA, 9 December 2019 - 13 December 2019 .

hdl:10013/epic.6e2040f7-ad35-439d-bc6d-edb0b0a727e9

Conference -Talk

Buttigieg, P. L.

, Janssen, F. , Peplies, J. and Macklin, J. (2019)
Creating a global network to link multi-omics and biogeochemical observations through long-term observatories. ,

Geophysical Research Abstracts, Vienna, Austria, 7 April 2019 - 12 April 2019 .

hdl:10013/epic.cc5fde5e-794a-4fa0-96a4-771fdd5e2648

Conference -Conference paper

Meador, T. B. , Buttigieg, P. L.

, Bowles, M. and Hinrichs, K. U. (2019)
Biogeochemical alignments: the coupling of ecology and geochemistry in the deep biosphere ,

European Geosciences Union 2019, Vienna, Austria, 7 April 2019 - 12 April 2019 .

hdl:10013/epic.ad54edf2-aadd-4585-9ffa-91043c4979ee

Conference -Talk

Vogt, L. , Auer, S. , Bartolomaeus, T. , Buttigieg, P. L.

, Grobe, P. , Michalik, P. , Stocker, M. and Usbeck, R. (2019)
FAIR.ReD: Semantic knowledge graph infrastructure for the life sciences ,

BiodiversityNEXT, Leiden, The Netherlands, 22 October 2019 - 25 October 2019 .

doi:10.3897/biss.3.37206 , hdl:10013/epic.cea2d390-1ac3-4dbd-b5aa-8f5b9c96e5c5

Conference -Poster

Buttigieg, P. L.

, Janssen, F.

, Macklin, J. and Pitz, K. (2019)
The Global Omics Observatory Network: Shaping standards for long-term molecular observation ,

BiodiversityNEXT, Leiden, The Netherlands, 22 October 2019 - 25 October 2019 .

doi:10.3897/biss.3.36712 , hdl:10013/epic.3ebac1df-a9f7-47e4-a72c-469ec2b055fc

Conference -Talk

Blum, S. , Barker, K. , Baskauf, S. J. , Berendsohn, W. G. , Buttigieg, P. L.

, Döring, M. , Droege, G. , Fichtmueller, D. , Glöckler, F. , Güntsch, A. , Guralnick, R. , Hoffmann, J. , Klazenga, N. , Macklin, J. , Morris, P. J. , Paul, D. L. , Petersen, M. , Robertson, T. , Sachs, J. , Shorthouse, D. , Walls, R. , Wieczorek, J. and Zermoglio, P. F. (2019)
Integrating ABCD and DarwinCore: Toward a better foundation for biodiversity information standards ,

BiodiversityNEXT, Leiden, The Netherlands, 22 October 2019 - 25 October 2019 .

doi:10.3897/biss.3.37491 , hdl:10013/epic.28e4fada-c0f2-4f31-a606-204d911df4a9

Conference -Talk

Buttigieg, P. L.

, Lanfear, J. , Glöckner, F. O.

and Macklin, J. (2019)
Mainstreaming Molecular Biodiversity: A call for a unified and interoperable framework ,

BiodiversityNEXT, Leiden, The Netherlands, 22 October 2019 - 25 October 2019 .

doi:10.3897/biss.3.37338 , hdl:10013/epic.1466da63-125f-47a7-aa33-ea5c024f58ba

Conference -Conference paper

Buttigieg, P. L.

, Caltagirone, S. , Simpson, P. and Pearlman, J. S. (2019)
The Ocean Best Practices System-Supporting a Transparent and Accessible Ocean ,

OCEANS 2019 MTS/IEEE SEATTLE, Seattle, Washington, USA, 27 October 2019 - 31 October 2019 .

doi:10.23919/OCEANS40490.2019.8962680 , hdl:10013/epic.49ee5d9d-3803-49f8-8fab-b280deca9d50

Conference -Talk

Subramanian, A. , RR, P. K. , Vikkurthi, M. and Buttigieg, P. L.

(2019)
Semantic Harmonisation of Numeric Data from Open Government Data ,

CoDS-COMAD '19: 6th ACM IKDD CoDS and 24th COMAD, Kolkata, India, January 2019 - January 2019 .

doi:10.1145/3297001.3297032 , hdl:10013/epic.53119ead-7fe7-4c84-b9b2-36aecdc21b84

Conference -Talk

Buttigieg, P. L.

, Walls, R. and Thessen, A. (2019)
Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity ,

BiodiversityNEXT, Leiden, The Netherlands, 22 October 2019 - 25 October 2019 .

doi:10.3897/biss.3.36234 , hdl:10013/epic.8ee7acdc-9618-4eba-979f-76ebab4cf767

Conference -Talk

Ung, V. and Buttigieg, P. L.

(2019)
Towards an Ontology of Comparative Biogeography: New insights into the semantics of biodiversity conservation ,

BiodiversityNEXT, Leiden, The Netherlands, 22 October 2019 - 25 October 2019 .

doi:10.3897/biss.3.37086 , hdl:10013/epic.a32399be-a133-4235-a93c-c2d42a5f77e5

Conference -Talk

Walls, R. L. , Amaral-Zettler, L. A. , Buttigieg, P. L.

, Deck, J. , Kotoulas, G. , Meyer, C. P. , Obst, M. , Robidart, J. , Scholin, C. A. , Wilson, W. H. and Davies, N. (2018)
Genomic Observatories Network: socio-technical perspectives on the path to long-term multi-omic observation ,

American Geophysical Union Fall Meeting, Washington D.C., USA, 10 December 2018 - 14 December 2018 .

hdl:10013/epic.2df17e32-4b51-4aa4-a58c-6ddc81f66faf

Conference -Community Service

Pfeiffenberger, H.

, Frickenhaus, S.

, Nerger, L.

, Piepenburg, D.

, Niehoff, B. , Lange, S.

, Behrendt, A.

, Pfalz, G.

, Koppe, R.

, Fischer, P.

, Mieruch-Schnülle, S.

, Wittig, R. , Leefmann, T. , Hendricks, S.

, Helm, V.

, Hoppema, M.

, Buttigieg, P. L.

, Klockmann, M. , Emeis, K. C. , Rath, W. and Wölfl, A. C. (2018)
Second Data Science Symposium at AWI ,

Second Data Science Symposium, Bremerhaven, Auditorium Nordseemuseum, 6 December 2018 - 6 December 2018 .

hdl:10013/epic.f2362c6e-2c6c-4962-a1f6-dd7a9d6f2eb0

[thumbnail of Second_Datascience_Symposium_AWI.pdf]

Preview

Conference -Talk

Buttigieg, P. L.

, Pearlman, J. and Heslop, E. E. (2018)
Managing the Evolution and Sustainability of Best Practices Across Ocean Science ,

2018 Ocean Sciences Meeting, Portland, Oregon, USA, 11 February 2018 - 16 February 2018 .

hdl:10013/epic.5d96c5c1-a5bc-4954-86bb-3960c418cca5

Conference -Conference paper

Buttigieg, P. L.

, Simpson, P. , Pearlman, J. , Piessierssens, P. , Caltagirone, S. , Bushnell, M. , Hermes, J. , Heslop, E. , Karstensen, J. , Muller-Karger, F. , Muñoz, C. and Pearlman, F. (2018)
Technologies for a FAIRer use of Ocean Best Practices ,

International Conference on Marine Data and Information Systems, Barcelona, Spain, 5 November 2018 - 7 November 2018 .

hdl:10013/epic.06c8c017-27c2-4ad6-b333-2ea848778ea5

Conference -Conference paper

Pearlman, J. S. , Buttigieg, P. L.

, Simpson, P. , Muñoz Mas, C. , Heslop, E. and Hermes, J. (2017)
Accessing existing and emerging best practices for ocean observation a new approach for end-to-end management of best practices ,

OCEANS, Anchorage, Alaska, USA, 18 September 2017 - 21 September 2017 .

hdl:10013/epic.c6cebb23-64a8-47c7-92c2-fafac1a1aa38

Conference -Invited talk

Buttigieg, P. L.

(2017)
Building semantics in the domain of trait data: an OBO Library approach ,

TDWG Annual Conference, Ottawa, Ontario, Canada, 1 October 2017 - 6 October 2017 .

doi:10.3897/tdwgproceedings.1.20293 , hdl:10013/epic.83d13813-2f29-4ee5-9ae9-5fc2c61817ae

Conference -Talk

Walls, R. and Buttigieg, P. L.

(2017)
Semantically Defining Populations for 'Omics Research ,

TDWG Annual Conference, Ottawa, Ontario, Canada, 1 October 2017 - 6 October 2017 .

doi:10.3897/tdwgproceedings.1.20435 , hdl:10013/epic.1d2fddd8-31ae-4a2d-877c-b1ec6ef10ef9

Conference -Talk

Ung, V. and Buttigieg, P. L.

(2016)
BiGAEOn: an ontology for Biogeographic areas ,

TDWG Annual Conference, Santa Clara de San Carlos, Costa Rica, 5 December 2016 - 9 December 2016 .

hdl:10013/epic.c8224a95-ca52-492e-95fd-cc1ed28c312d

Conference -Conference paper

Pereira, E. , Buttigieg, P. L.

, Medema, M. , Yeong, M. , Kottmann, R. , Fernandez-Guerra, A. and Glöckner, F. O.

(2016)
Biogeography of biosynthetic gene clusters in the marine environment ,

41st CIESM Conference, Kiel, Germany, 12 September 2016 - 16 September 2016 .

hdl:10013/epic.0c8ad848-27c5-4592-b839-1c9a092a1fa6

Conference -Talk

Buttigieg, P. L.

, Jensen, M. , Walls, R. L. and Mungall, C. J. (2016)
Environmental Semantics for Sustainable Development in an Interconnected Biosphere ,

ICBO/BioCreative 2016, Corvalis, Oregon, USA, 1 August 2016 - 4 August 2016 .

hdl:10013/epic.6931841a-09b0-46c4-8a8b-7ba45782a8f0

Conference -Invited talk

Buttigieg, P. L.

(2015)
Enhancing the semantic layer for marine microbial observation in the multi'omics era ,

Lawrence Berkeley National Laboratory Seminar Series .

hdl:10013/epic.628c3cfb-7798-47d8-818d-8f89b7ba158d

Conference -Invited talk

Buttigieg, P. L.

(2014)
Standardizing the Description of Environments: Perspectives From the Environmental Ontology Project ,

Workshop for the Development of a Framework for Environmental Health Science Language, Raleigh, North Carolina, USA, 15 September 2014 - 16 September 2014 .

hdl:10013/epic.17f54d39-6463-4581-b1b8-caa61bcf3fc2

Conference -Invited talk

Buttigieg, P. L.

and Ramette, A.

(2014)
Effects of hosts, spatial scales, and taxonomic resolution on microbial diversity in a rapidly changing world ,

International Symposium on Microbial Ecology, Seoul, South Korea, 24 August 2014 - 29 August 2014 .

hdl:10013/epic.4705bda9-aff1-4434-874f-7236f54af8c6

Conference -Poster

Buttigieg, P. L. , Brandt, P. , Gerdts, G.

and Wichels, A.

(2008)
Comparing bacterial community structure across the North Atlantic: insights from PCR-DGGE ,

MarMic Lab Rotation Series 2008, July 2008, Bremen, Germany .

hdl:10013/epic.31869

Other

Körtzinger, A. , Buttigieg, P. L.

, Janssen, F.

, Metfies, K.

, Salter, I.

, Wenzhöfer, F.

, Steinhoff, T. , Fiedler, B. , Hahn, T. , Seelmann, K. , Canning, A. , Lampitt, R. , López, P. , Villagarcia, M. and Peplies, J. (2019)
OceanSITES Innovation Report ,

[Other]

hdl:10013/epic.1eebbc1a-4a90-4b58-b3e7-6bfd693ce1c5

[thumbnail of D3-17_OceanSITES-Innovation-Report_final.pdf]

Preview

Other

Lampitt, R. S. , Karstensen, J. , Buttigieg, P. L.

and Janssen, F.

(2019)
AtlantOS Deliverable 3.8: OceanSITES Networking Report ,

[Other]

hdl:10013/epic.5507f9ff-3f67-42c9-9b67-cd4717259664

[thumbnail of D3-8_OceanSITES_Networking_Report_final.pdf]

Preview

Other

Connelly, D. , Afonso, P. , Whoriskey, F. , Morris, A. , Mowlem, M. , Sousa Pinto, I. , Davies, N. , Wölfl, A. C. , Handegard, N. O. , Devey, C. W. , Janssen, F.

and Buttigieg, P. L.

(2018)
AtlantOS Deliverable 6.2: Roadmap for emerging networks ,

[Other]

hdl:10013/epic.2347a415-8c86-4478-8cad-87407afac088